PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00101
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 192aa    MW: 22163.8 Da    PI: 6.3956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00101genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.7e-30107165159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYG+K+++gs+fpr+Y++C+ ++C vkkk+er++++p++v +tYeg Hnh+
  AA46G00101 107 LDDGYKWRKYGKKPITGSQFPRHYHKCSNPDCIVKKKIERDNNNPEFVLTTYEGVHNHQ 165
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-2897167IPR003657WRKY domain
PROSITE profilePS5081126.716102167IPR003657WRKY domain
SuperFamilySSF1182907.06E-25105167IPR003657WRKY domain
SMARTSM007743.2E-30107166IPR003657WRKY domain
PfamPF031062.5E-21108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNYPSNPNPN FPEFEKTFDD FEDVFGMIMS EIGLEDYYSS SPAQSMTSSE KLVTVETSAS  60
SVPTNFTTIS PMNHETIGYK NEMKKRKRRE NSPIIHIFKT KSMDDSLDDG YKWRKYGKKP  120
ITGSQFPRHY HKCSNPDCIV KKKIERDNNN PEFVLTTYEG VHNHQSPSVV YCDSEDLDFI  180
SLKMFNFSHS AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2298168878Probable WRKY transcription factor 4
2lex_A3e-2298168878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635274.12e-79PREDICTED: probable WRKY transcription factor 59
RefseqXP_013669910.12e-79probable WRKY transcription factor 59
SwissprotQ9SJ095e-65WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A1J3E5M22e-84A0A1J3E5M2_NOCCA; Putative WRKY transcription factor 59
STRINGBostr.5022s0044.1.p1e-79(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.12e-60WRKY DNA-binding protein 59