PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00155
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 78aa    MW: 9051.32 Da    PI: 6.7912
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00155genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.4e-171312151
                HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                +KKA+ELS+LCdaeva+iifs+t+kly+++s
  AA46G00155  1 MKKAKELSILCDAEVALIIFSNTNKLYDFAS 31
                8****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003195.6E-13129IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-5132IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-18161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.287133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MKKAKELSIL CDAEVALIIF SNTNKLYDFA SSSMKSTIEK FNNTKIEQQQ LLDPAAEAKF  60
WQREVTNLRH ELHTLHEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603502.12e-39PREDICTED: agamous-like MADS-box protein AGL17
SwissprotQ9SZJ63e-37AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1J3DYU84e-39A0A1J3DYU8_NOCCA; Agamous-like MADS-box protein AGL17
TrEMBLA0A1J3IXG43e-39A0A1J3IXG4_NOCCA; Agamous-like MADS-box protein AGL17 (Fragment)
STRINGBra039921.1-P2e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-39AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]