PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00163
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 388aa    MW: 44566.2 Da    PI: 8.0371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00163genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10110156455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  AA46G00163 110 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRMKQLQ 156
                 5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-10111160No hitNo description
SuperFamilySSF474594.45E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDEDFFLPDF SLEDIDFNFN CCNEINLSSD DTKTRAQIPR SSSYFDHSMN LECFRENSKL  60
MMKQEKKINK KPQLISFDFS SEEEINRFVG HGTKRKGFSS GTRSPILAKE HVLAERKRRE  120
KLSEKFIALS ALLPGLKKAD KITVLDDAIS RMKQLQEQVK KLKEEKEATK EMESMILVKK  180
SKVYIDDEPN FLSSPSENEQ FDQSTLPEIE AKVVQNEVLI RIHCEKSKGC MINILNVVEN  240
LRLNVANSIV LPFGDSILDI TILAQMEQDF SVTILKDLIR NLRLAMLFLE PTYFRSLAGK  300
LQYLTLTRPD IQFAVNYVCQ KMHSPSVSDF NLLKRVLRYV KGTVTYGVFF SAASTYFLSA  360
YSNSDWANCK ETRRSKQPTV SRSSTEAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
2115120RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00163
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179861.21e-138basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ1PF161e-139BH019_ARATH; Transcription factor bHLH19
TrEMBLC0SV561e-136C0SV56_ARATH; Uncharacterized protein At2g22760 (Fragment)
STRINGAT2G22760.11e-137(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-125bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]