PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00167
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25053.2 Da    PI: 7.8664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00167genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1999153256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  AA46G00167  99 RKKLRLNKEQSSLLEESFKNHSTLNPKQKQALARQLNLMPRQVEVWFQNRRARTK 153
                 678899***********************************************98 PP
2HD-ZIP_I/II123.97.5e-4099188191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l++en+rLeke +eL+ +l
   AA46G00167  99 RKKLRLNKEQSSLLEESFKNHSTLNPKQKQALARQLNLMPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLTDENRRLEKEIQELK-TL 188
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.7E-1597159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-1799153IPR009057Homeodomain-like
PfamPF000463.0E-1699153IPR001356Homeobox domain
SuperFamilySSF466892.95E-1799164IPR009057Homeodomain-like
PROSITE profilePS5007116.50399155IPR001356Homeobox domain
CDDcd000861.96E-1599156No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PfamPF021836.7E-10155188IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.6E-21155198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGFDDFCNTS LVLELGLNNY NNAIKRSSPS LTLSLSGAGA GDESGASSFS SGRIIKRERE  60
ESTAERLTII TSSRLMNGQD QEQEQEQEEE ISVSVGVGRK KLRLNKEQSS LLEESFKNHS  120
TLNPKQKQAL ARQLNLMPRQ VEVWFQNRRA RTKLKQTEVD YEFLKKCCET LTDENRRLEK  180
EIQELKTLKL THQSFLMQIP SSTSLTICPS CENIRGHGGP GN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633686.19e-84PREDICTED: homeobox-leucine zipper protein HAT9
SwissprotP466034e-76HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A0D3C1B82e-82A0A0D3C1B8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CEB72e-82A0A3P6CEB7_BRAOL; Uncharacterized protein
STRINGBo4g151080.13e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.12e-70HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]