PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00207
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 218aa    MW: 23350.2 Da    PI: 10.1488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00207genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY331.2e-10194213322
                 -SS-EEEEEEE--TT-SS-E CS
        WRKY   3 DgynWrKYGqKevkgsefpr 22 
                 D y+WrKYGqK++kgs++pr
  AA46G00207 194 DDYSWRKYGQKPIKGSPHPR 213
                 99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.5E-16144190IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.7E-10181213IPR003657WRKY domain
PROSITE profilePS5081111.945187213IPR003657WRKY domain
SuperFamilySSF1182904.18E-8190213IPR003657WRKY domain
PfamPF031068.1E-7194213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAVELMTRNY ISAVGSDNFD LQEAAASGLK SIENFIGVMS REDFNSNQSS SSSAAATATA  60
TTRSNFAGFF SKSTTTSNAA VSIYATNVTV SIYATNDTVS IYAAKSRNSC NDVVSNFTEF  120
SSLSSVTTET APFSTQSLSV ISSKRKCNSE TLVAGKCASA SSGRCHCSKK RKLKQKRVIR  180
VPAISAKMSD VPPDDYSWRK YGQKPIKGSP HPRLVKSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00207
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533212e-61AK353321.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429281.15e-74PREDICTED: probable WRKY transcription factor 15
SwissprotO221764e-72WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLF4ILJ12e-71F4ILJ1_ARATH; WRKY DNA-binding protein 15
STRINGXP_010429281.12e-73(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.22e-74WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]