PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA482G00004
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18175.8 Da    PI: 7.6009
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA482G00004genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-16957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k ien  nrqvtfskRr gi+ KA  L  L +a++ v+ifs+tg+ y y
  AA482G00004  9 KYIENPNNRQVTFSKRRSGIFNKADALVNLSGADIGVLIFSPTGRPYVY 57
                 579*****************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.478161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-21269IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-191157IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRQKIDMKY IENPNNRQVT FSKRRSGIFN KADALVNLSG ADIGVLIFSP TGRPYVYGNP  60
TFFDGAELFL AGNQTSSGLS AKREAKKTIV VELQDELDHL MAEMDKKEVI CKGLKKIHEE  120
NVANGYNVKG IDSLSLQDLI EFKNKVEVAH QEKLMLPKDM EN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA482G00004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-27AGAMOUS-like 29