PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA48G00038
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 192aa    MW: 22098.4 Da    PI: 5.9494
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA48G00038genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.91.3e-14141192250
     G2-like   2 prlrWtpeLHerFveaveqLG...GsekAtPktilelmkvkgLtlehvkSHL 50 
                  r +Wt e H++F+ av+q+    G +  tPk+i  lm+++gLt+ h++SHL
  AA48G00038 141 LRFVWTDERHNQFLVAVDQIErtrGVNSVTPKHIHGLMNIEGLTRLHIASHL 192
                 699***********9999874444***************************9 PP
2Response_reg53.61.2e-1848034109
                   HHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  34 ealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    ale ++ ++  +Dli++ ++mp++dG+ell+ i++e  ++pii+++++ + e++++a+k+Ga  +l+Kp+ +e l +
    AA48G00038   4 MALEVIRSNTikFDLIIIELDMPEIDGFELLQLITRET-NIPIILMSSNINLELMEKAIKYGAYFVLAKPITIEFLKN 80 
                   588899888888**********************9988.9*******************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.099186IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-15379IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.09E-17386No hitNo description
Gene3DG3DSA:3.40.50.23002.1E-194100No hitNo description
SuperFamilySSF521721.15E-215105IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.608.4E-14138192IPR009057Homeodomain-like
SuperFamilySSF466894.66E-10139192IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-13140192IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSKMALEVIR SNTIKFDLII IELDMPEIDG FELLQLITRE TNIPIILMSS NINLELMEKA  60
IKYGAYFVLA KPITIEFLKN TCLNVLTKHK LQNENNENLS REQINWPSDP SILDYGLESE  120
RNCIDNGEKQ VETSNSNAKK LRFVWTDERH NQFLVAVDQI ERTRGVNSVT PKHIHGLMNI  180
EGLTRLHIAS HL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA48G00038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-29response regulator 10