PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA48G00040
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 413aa    MW: 47491.1 Da    PI: 9.3453
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA48G00040genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like711.8e-22178233155
     G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k r+ Wt++LH++F+eave+L  +  kA+Pk+ilelm+ k L++e+v+SHLQk+Rl
  AA48G00040 178 KSRVFWTKDLHNKFIEAVEKLEANgRKAVPKKILELMNAKNLSRENVASHLQKHRL 233
                 689******************754268****************************8 PP
2Response_reg63.69.6e-22221263107
                   EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   3 ivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   +v D++  +  l ++l+ ++y +v+ +d++  alel++ek+   Dli++ +emp+mdG+ell+ i+ e  k+p+i+++++ + e++++a+k  a  +
    AA48G00040  22 LVVDHDQTCPFLPELLSLSQY-QVELVDKSNTALELVREKKkeLDLIIIELEMPDMDGFELLQLITLET-KIPVILMSSNTNTELMEKAIKNKAYFV 116
                   56799999*************.***************888878**********************9988.9************************** PP

                   EESS--HHHH CS
  Response_reg  98 lsKpfdpeel 107
                   l+Kp+ +e  
    AA48G00040 117 LTKPITIEMF 126
                   *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-2418158No hitNo description
SuperFamilySSF521729.25E-2319145IPR011006CheY-like superfamily
SMARTSM004481.0E-1619130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.87719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1722124IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.56E-1822126No hitNo description
Gene3DG3DSA:1.10.10.606.7E-23175237IPR009057Homeodomain-like
PROSITE profilePS5129411.728175236IPR017930Myb domain
SuperFamilySSF466893.05E-15176237IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-20178234IPR006447Myb domain, plants
PfamPF002494.1E-7183232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCDTVAEEFE ISNQSPIGLK VLVVDHDQTC PFLPELLSLS QYQVELVDKS NTALELVREK  60
KKELDLIIIE LEMPDMDGFE LLQLITLETK IPVILMSSNT NTELMEKAIK NKAYFVLTKP  120
ITIEMFNNTC LYVIQKHKVE NESRSNCGEK KDISENLSAV SISSRSKTKV DDSKNQKKSR  180
VFWTKDLHNK FIEAVEKLEA NGRKAVPKKI LELMNAKNLS RENVASHLQK HRLNSQKQPT  240
KRGIAARNNN DSFHSIPTKR IQTKTAPTAP AIRPRTDLSH INPLYQSGQL INNVRPRPNP  300
ASGMFLQKPN EMRNYQMVQP YANYNGNIFQ QMRPPRVNFD HIDYNNKNSL LMPPPRNIFF  360
GGNQEQSRFS NEYSGFNVPN NHFEVPLETN LDANERGLYK NMEFGERSIR RDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-15176237362ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA48G00040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15903712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-59response regulator 12