PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00042
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 262aa    MW: 31074.3 Da    PI: 8.3406
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.3e-171151343
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               ien+  r  t+ kR++ ++KKA E  +LC++e+++ii+++t
  AA4G00042 11 IENDKTRMMTYKKRKASLFKKATEFTTLCGVEACLIIYGPT 51
               9**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.021151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-19383IPR002100Transcription factor, MADS-box
CDDcd002661.23E-21381No hitNo description
PRINTSPR004042.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFKKKSSLQW IENDKTRMMT YKKRKASLFK KATEFTTLCG VEACLIIYGP TKPTDDVIIE  60
PELWPKDQTK VKNIIDKYKD TMSNCCRKDF NIDYFVTDLK KEKKHSENRE NKYSTWEEKI  120
QKCSKEELVA ILLTVDNKLH EVLKRKQRLS WSYNNGNNNN IGPTMEQYCI ESQQQELMFP  180
MAASTSQIQM GNNVLEMEAM SNLYDHHQNQ HQHHHHQNVF YDYVHGQMMQ RQGNGYGIEP  240
VLPQYWFNNY NQMSGYRGPF DP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224KKKSSLQWIENDKTRMMTYKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-59AGAMOUS-like 82