PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00073
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 256aa    MW: 30066.2 Da    PI: 6.5144
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00073genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.21e-181052244
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
               ri n+  r +tf kR++ ++KKA ELS+LC++e ++i++++++
  AA4G00073 10 RIINEKTRITTFKKRKACLFKKATELSTLCGIETCLIVYGPSQ 52
               788999**********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.283151IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-19291IPR002100Transcription factor, MADS-box
CDDcd002665.01E-23282No hitNo description
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRKIVKMRR IINEKTRITT FKKRKACLFK KATELSTLCG IETCLIVYGP SQPGEELVLE  60
PELWPKDESK IRNIITKYKD TAFSSCTKTY TIQECLEKKN KEKQPLKYSS WDNKFDLYSL  120
QELFAVFTTV ESKIQEVEKR QNWNQMVPDT YWSNYQCFDQ TQELQQHQEQ QFFAYGVEDQ  180
TAMAAPVSSM TESEIAEALM RMRGNEKQNL CSVFYDGQYG HFGQYGEYCP MMQQQQWSLG  240
NNLVFNNGMQ FTDYNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879548.13e-77agamous-like MADS-box protein AGL82
TrEMBLQ9FM695e-75Q9FM69_ARATH; At5g55690
STRINGAT5G55690.19e-76(Arabidopsis thaliana)
STRINGBostr.26833s0688.1.p1e-75(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-77M-type_MADS family protein