PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00113

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 232aa MW: 26676.8 Da PI: 6.9232

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00113	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.1	5.5e-30	5	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyrl AA4G00113 5 GEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PTTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 77 579**********************************98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.015	1	134	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-33	3	87	IPR003441	NAC domain
Pfam	PF02365	1.0E-14	9	77	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-33	122	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
LALYGEKEWY FFSHRDRKYP NGSRPNRAAG TGYWKATGAD KPIGKPTTLG IKKALVFYAG 60 KAPKGIKTNW IMHEYRLANV DRSASSGSNK KNNLRVSFKH FPIFNFNFNF GVDFNEVWKN 120 LQLDDWVLCR IYNKKGIIEK YEEKSTTSDS RCSSHVISSD VTCSEVQSEP QWCELVDDAF 180 EGFDSSLFGD SIEFLQNDAF VPQFPYQSDF FVSSFQDQDQ PEEKPFSKWT LG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-43	2	140	64	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00113

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005234	8e-80	AB005234.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK5.
GenBank	AY045843	8e-80	AY045843.1 Arabidopsis thaliana unknown protein (At5g63790) mRNA, partial cds.
GenBank	AY088431	8e-80	AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence.
GenBank	BT000896	8e-80	BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds.
GenBank	CP002688	8e-80	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460978.1	1e-104	PREDICTED: NAC domain-containing protein 102-like
Swissprot	Q8H115	1e-101	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	R0GNC1	1e-102	R0GNC1_9BRAS; Uncharacterized protein
STRING	XP_010460978.1	1e-103	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	1e-104	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]