PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00115
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 54aa    MW: 6315.09 Da    PI: 4.605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00115genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM576.5e-18753148
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
               lp+GfrFhPtdeelv++yL+++++++++++  vi+e+d+yk++Pw+Lp
  AA4G00115  7 LPAGFRFHPTDEELVKFYLCRRCASEPISV-PVIAEIDLYKFNPWELP 53
               799***************************.89**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-19353IPR003441NAC domain
PROSITE profilePS5100521.019754IPR003441NAC domain
PfamPF023658.4E-8848IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MKAELDLPAG FRFHPTDEEL VKFYLCRRCA SEPISVPVIA EIDLYKFNPW ELPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-212531061Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00115
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439406.19e-31PREDICTED: NAC domain-containing protein 102-like
RefseqXP_018439407.19e-31PREDICTED: NAC domain-containing protein 102-like
SwissprotQ8H1155e-31NA102_ARATH; NAC domain-containing protein 102
TrEMBLA0A398AGK81e-29A0A398AGK8_BRACM; Uncharacterized protein
STRINGBra029201.1-P3e-30(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-33NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]