PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00191

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 191aa MW: 21901.3 Da PI: 4.7893

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00191	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.9	1.2e-33	3	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wy++s++ +nr+t++gyW + g d++++++ ++++ AA4G00191 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYYYSRK--------TQNRVTSNGYWGSMGIDEPIFTSsTHKK 93 79***********************999.99***********87778899*997........469*************99867888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkk L fy g++ +t+Wvm+ey+l AA4G00191 94 VGLKKYLNFYLGDS----QTNWVMQEYSL 118 ******7654....68*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-43	1	159	IPR003441	NAC domain
PROSITE profile	PS51005	40.86	3	159	IPR003441	NAC domain
Pfam	PF02365	1.3E-21	4	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60 YYSRKTQNRV TSNGYWGSMG IDEPIFTSST HKKVGLKKYL NFYLGDSQTN WVMQEYSLPD 120 SSSSSSRRSS SKKSSSRASS SSTHKPDYSK WVICRVYEQN CSEEEDEDGT ELSCLDEVFL 180 SLDDLDEVSL P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	1	165	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	1	165	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	1	165	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	1	165	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	1	165	18	174	NAC domain-containing protein 19
3swm_B	2e-35	1	165	18	174	NAC domain-containing protein 19
3swm_C	2e-35	1	165	18	174	NAC domain-containing protein 19
3swm_D	2e-35	1	165	18	174	NAC domain-containing protein 19
3swp_A	2e-35	1	165	18	174	NAC domain-containing protein 19
3swp_B	2e-35	1	165	18	174	NAC domain-containing protein 19
3swp_C	2e-35	1	165	18	174	NAC domain-containing protein 19
3swp_D	2e-35	1	165	18	174	NAC domain-containing protein 19
4dul_A	2e-35	1	165	15	171	NAC domain-containing protein 19
4dul_B	2e-35	1	165	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00191

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619013.1	1e-118	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GWK6	1e-116	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A078H0M4	1e-116	A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBL	A0A398ANP3	1e-116	A0A398ANP3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6AL41	1e-116	A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBL	M4ESY5	1e-116	M4ESY5_BRARP; Uncharacterized protein
STRING	Bostr.0568s0345.1.p	1e-117	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-99	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]