PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00238

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7002.79 Da PI: 11.0568

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00238	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.9	2.7e-23	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krienks rqvtfskRrng++ KA LSvLC+ vav+++s tgkly AA4G00238 9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCESSVAVLVVSATGKLYN 56 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.217	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-22	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGRRKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCE SSVAVLVVSA TGKLYNSSSG 60 DDX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-17	1	61	1	61	MEF2C
5f28_B	9e-17	1	61	1	61	MEF2C
5f28_C	9e-17	1	61	1	61	MEF2C
5f28_D	9e-17	1	61	1	61	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269\|PubMed:12724541, ECO:0000269\|PubMed:19139056, ECO:0000269\|PubMed:20551443}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00238

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269\|PubMed:15520273, ECO:0000269\|PubMed:15659097}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150584.1	8e-34	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Refseq	XP_009150585.1	8e-34	PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
Refseq	XP_024007051.1	8e-34	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL27
Swissprot	Q9FPN7	2e-32	AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBL	A0A3N6RWK1	1e-32	A0A3N6RWK1_BRACR; Uncharacterized protein (Fragment)
STRING	Bra024350.1-P	3e-33	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	2e-35	AGAMOUS-like 31

Publications ? help Back to Top
Suter L,Rüegg M,Zemp N,Hennig L,Widmer A Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis. Plant Physiol., 2014. 166(4): p. 1928-42 [PMID:25339407]