PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00322
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 227aa    MW: 24573.8 Da    PI: 8.0813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00322genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-0580102123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ CgksF++   L  H  +H
  AA4G00322  80 YTCTVCGKSFTSYQALGGHKTSH 102
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.2E-1078102No hitNo description
PfamPF139122.3E-1280104IPR007087Zinc finger, C2H2
SMARTSM003550.004480102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.19880107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-10141168No hitNo description
PfamPF139127.3E-11146170IPR007087Zinc finger, C2H2
SMARTSM003550.82146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MALRTLNSTT TTTVTTTTKP LLRYRDEIEP ENLEQWSKRK RTKRHRSEEE YLALCLLMLA  60
RGSDSQQSPP SPQPSDHRCY TCTVCGKSFT SYQALGGHKT SHRKPNNNSQ EQLSNNTNGN  120
GNGISVTVNG NESSVSNGVN QTGKIHTCSI CFKSFSSGQA LGGHKRCHYE GNGNGNGNGN  180
GSSSNNSNSV EIVNGGGDGD ERSLEEQSHR GFDLNLPADH VISLLSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00322
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553039.12e-84zinc finger protein AZF1-like
SwissprotQ9SSW12e-78AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A397XRZ95e-80A0A397XRZ9_BRACM; Uncharacterized protein
TrEMBLA0A3P5XVL45e-80A0A3P5XVL4_BRACM; Uncharacterized protein
TrEMBLM4F9T15e-80M4F9T1_BRARP; Uncharacterized protein
STRINGBra037845.1-P9e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-61zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]