PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA50G00008
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 256aa    MW: 28150 Da    PI: 7.7701
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA50G00008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like506.5e-1613422655
     G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                +AtPkti+++m+vkgLtl+h+kSHLQk+Rl
  AA50G00008 13 EATPKTIMRTMGVKGLTLYHLKSHLQKFRL 42
                7****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-6243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-141244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-91343IPR006447Myb domain, plants
PfamPF143791.2E-1086107IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143794.5E-11117142IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
SFFLLLCMFL LTEATPKTIM RTMGVKGLTL YHLKSHLQKF RLGRQACKES TENSKDASCV  60
GESQDTGSSS TSSLRLAAQE QNEGYQVTEA LRAQMEVQRR LHEQLEVCFL SFFLANVQRR  120
LQLRMEAQGK YLQSILEKAC KAFDEQATTF PGLEAAREEL SELAIKVSNG CQGTTVAFDA  180
TKMIMPSLSE LGVAIDHKNN NNITGNCSLE SSLTSTTNGS SVSAALMKKR HRGSFNNGES  240
IALGYETGWI VPSSNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA50G00008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414870.11e-136protein PHR1-LIKE 3 isoform X1
SwissprotQ8LAJ71e-131PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLV4MSP31e-134V4MSP3_EUTSA; Uncharacterized protein
STRINGXP_006414870.11e-135(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.21e-120G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]