PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA52G00009
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 661aa    MW: 75300.7 Da    PI: 8.8083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA52G00009genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-09605648445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  ++ lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
       AA52G00009 605 WSAVQEKALVQALKTFPKEtsqRWERVAAAVP-GKTMNQCKKKFA 648
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465658.11E-2253178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.4E-2196201IPR001623DnaJ domain
SMARTSM002715.0E-1899174IPR001623DnaJ domain
PROSITE profilePS5007618.258100182IPR001623DnaJ domain
PfamPF002269.0E-18100179IPR001623DnaJ domain
CDDcd062572.37E-12100171IPR001623DnaJ domain
PRINTSPR006251.4E-8105123IPR001623DnaJ domain
PRINTSPR006251.4E-8123138IPR001623DnaJ domain
PRINTSPR006251.4E-8154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.633460515IPR017877Myb-like domain
SuperFamilySSF466895.53E-6462508IPR009057Homeodomain-like
SMARTSM007170.0043464517IPR001005SANT/Myb domain
CDDcd001674.68E-4467507No hitNo description
SMARTSM007171.1E-8601653IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-9602650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-5604649IPR009057Homeodomain-like
PfamPF002491.1E-7605649IPR001005SANT/Myb domain
PROSITE profilePS500907.155605651IPR017877Myb-like domain
CDDcd001671.72E-6605651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKRPGVKSTI KLITYSEELV DGQPLYSFSN CLPVKALNRE PAGHSFHAAA LKLRGCSKEP  60
TDDEDGDKKA ADDKEKEYVP SFSSSSNKGK NKKSGKQQQD HYALLGLSNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL TEKTEEAKEA KKEEIESHFK AIQEAYEVLM DPTKRRIFDS  180
TDEFDDDIPT DCSPQDFFKV FGPAFKRNAR WSVNERVPDL GDENTPLRDV DRFYKFWYAF  240
KSWREFPDEV EHDLEDADGR DERRWMEKEN ARKTAKVRKE EYVRIRSLVD NANKKDPRIL  300
KRKEEEKAEK LRKKEEKHSA KKKQAEEAAI AAEEEKKRKE EEAKRAAEAA QQQKKAKEKE  360
KKLLRKERSR LRSLSAPLVA QRLLGITEED IENLCMSLNT LQLQNLCDKM VNKEGLDMAK  420
VIKEGNNNEE ADSKEEKETA KPITQNGHTE PINQTPQSNN IQKKDLPWSK EEVDMLRKGI  480
VKFPKGTSRR WEVISDYIGT ARSVEEILKA TKTVLLQKPD SSKAFDSFLE KRKPVVSISS  540
PLSTREELGE SLPTAAHEDN NNDTTETKPS EEKSSSSQTS DNNGNSEPAA VPATAAARNS  600
EGDGWSAVQE KALVQALKTF PKETSQRWER VAAAVPGKTM NQCKKKFAEL KEIIRSKKTA  660
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1318929913123Zuotin
5dje_B1e-1318929913123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KKKQAEEAAIAAEEEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA52G00009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
RefseqXP_010486796.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
TrEMBLF4J6A80.0F4J6A8_ARATH; DnaJ and Myb-like DNA-binding domain-containing protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
STRINGXP_010486796.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-149DnaJ domain ;Myb-like DNA-binding domain