PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA52G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 545aa    MW: 62149.7 Da    PI: 8.5888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA52G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.4e-09489532445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  ++ lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
       AA52G00012 489 WSAVQEKALVQALKTFPKEtsqRWERVAAAVP-GKTMNQCKKKFA 532
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.89E-2253178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.5E-2196201IPR001623DnaJ domain
SMARTSM002715.0E-1899174IPR001623DnaJ domain
PROSITE profilePS5007618.258100182IPR001623DnaJ domain
CDDcd062572.87E-12100171IPR001623DnaJ domain
PfamPF002268.0E-18100179IPR001623DnaJ domain
PRINTSPR006258.5E-9105123IPR001623DnaJ domain
PRINTSPR006258.5E-9123138IPR001623DnaJ domain
PRINTSPR006258.5E-9154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
SMARTSM007171.1E-8485537IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-9486534IPR009057Homeodomain-like
PfamPF002498.8E-8489533IPR001005SANT/Myb domain
PROSITE profilePS500907.155489535IPR017877Myb-like domain
CDDcd001671.13E-6489535No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5489533IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MKKPGVESTI KLITYSEELV DGQPLYSFSN CLPVKALNRE PAGHSFHAAA LKLRGCSKEP  60
TDDEDGDKKA ADDKEKEYVP SFSSSSNKGK NKKSGKQQQD HYALLGLSNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL TEKTEEAKEA KKEEIESHFK AIQEAYEVLM DPTKRRIFDS  180
TDEFDDDIPT DCSPQDFFKV FGPAFKRNAR WSVNERVPDL GDENTPLRDV DRFYNFWYAF  240
KSWREFPDEV EHDLEDADCR EERRWMEKEN ARKTAKVRKE EYVRIRSLVD NANKKDPRIL  300
KRKEEEKAEK LRKKEEKHSA KKKQAEEAAI AAEEEKKRKE EEAKRAAEAA QQQKKAKEKE  360
KKLLRKERNR LRSLSAPLVA QRLLDITEED IENLCMSLNT LQLQNLCDKM RKPVVSISSP  420
LSTREELGES LPTAAHDNNN NNNTTKTKPS EEKSSSSQTS DNNSNNNGNT EPAAVPATAA  480
AGNSEGDGWS AVQEKALVQA LKTFPKETSQ RWERVAAAVP GKTMNQCKKK FAELKEIIRS  540
KKSAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1318929913123Zuotin
5dje_B8e-1318929913123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KKKQAEEAAIAAEEEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA52G00012
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
TrEMBLF4J6A80.0F4J6A8_ARATH; DnaJ and Myb-like DNA-binding domain-containing protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-152DnaJ domain ;Myb-like DNA-binding domain