PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00004

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 136aa MW: 14701.6 Da PI: 7.0709

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00004	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.7	6.8e-18	30	81	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp e+r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++e AA53G00004 30 LPMEQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAE 81 7889*******************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.363	1	82	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-16	30	79	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MKESSRKQGA ASPCAACKLL RRRCAHDCEL PMEQRGDAVS SMVYEANARV RDPVYGCVGA 60 ISSLQQQIDV LQAQLALAQA EVVHLRVRHS THLSSHVACS DSPSSSGSPP QGNKGMFNNH 120 MDIMDEASLG ESMWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	9	83	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	9	83	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486923.1	2e-64	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-58	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A078INQ1	9e-63	A0A078INQ1_BRANA; BnaCnng19520D protein
TrEMBL	A0A0D3D5L9	9e-63	A0A0D3D5L9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EJ49	9e-63	A0A3P6EJ49_BRAOL; Uncharacterized protein
STRING	Bo7g041000.1	1e-63	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-52	LOB domain-containing protein 4