PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00217
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 518aa    MW: 57741.5 Da    PI: 4.7699
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00217genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35521432102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+n+nsf+v+d+ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k++l++i 
    AA53G00217  52 FLSKTYDMVDDPATDSIVSWSRNNNSFIVWDPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHMLRTIT 139
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    AA53G00217 140 RRKP 143
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3946135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-6248141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.29E-3548141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-195275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDGSKETPPS DGGGVAGGGK GETGSLSKES AEIKPPQPQP VSILSSNAPP PFLSKTYDMV  60
DDPATDSIVS WSRNNNSFIV WDPPEFARDL LPKNFKHNNF SSFVRQLNTY GFRKVDPDRW  120
EFANEGFLRG QKHMLRTITR RKPANGHGQQ QSQHPHGQKS SVSACVEVGK FGLEEEVERL  180
KRDKNVLMQE LVRLRQQQQS TDNQLQTMVQ RLQGMEQRQQ QLMSFLAKAV QSPHFLSQFL  240
QQQNQQNESS KRISDTSKKR RFKRDGFVGN QSSASPDGQI VKYKPPMHEK AKAMFKQLMK  300
MEPYKTGDDG FLLDNGVSTM EGTETESSPS HSSGITLHEM PTASLYPPSA VVSDIESSPS  360
GENPENVCVS KFADISEFPA SEEATDVCLP SPDLLLHELA DMLPENIGDM PADNSMEPNI  420
GSGPFLDPDL LINDSLPFDI DDIPMDPDLD PLVDYSQFLE DYLVASPLPD DMDLTPADLK  480
IEHKELEQKQ NGWNKAKHVD KLTQKMGLLS PENTDPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-255014118120Heat shock factor protein 1
5d5u_B7e-255014127129Heat shock factor protein 1
5d5v_B7e-255014127129Heat shock factor protein 1
5d5v_D7e-255014127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00217
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461051.10.0PREDICTED: heat stress transcription factor A-1d-like
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A1J3GZ390.0A0A1J3GZ39_NOCCA; Heat stress transcription factor A-1d (Fragment)
TrEMBLA0A1J3JQP30.0A0A1J3JQP3_NOCCA; Heat stress transcription factor A-1d
STRINGBostr.3359s0126.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]