PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00240
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LSD
Protein Properties Length: 120aa    MW: 12415.6 Da    PI: 7.9189
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00240genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.65.6e-151640125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lL+YP GA+sV+Ca+C++V
  AA53G00240 16 CSGCRNLLMYPVGATSVCCAVCNAV 40
                ************************9 PP
2zf-LSD147.23.5e-155579125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+tV
  AA53G00240 55 CGGCHTLLMYIRGATSVQCSCCHTV 79
                ************************9 PP
3zf-LSD138.81.5e-1293117125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lL+Y +GA+sV+Ca+C +V
  AA53G00240  93 CGNCRMLLMYQYGARSVKCAVCSFV 117
                 **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.3E-141343IPR005735Zinc finger, LSD1-type
PfamPF069439.1E-121640IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.3E-155281IPR005735Zinc finger, LSD1-type
PfamPF069439.7E-135579IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-1190120IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-1293117IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MNIAGSGNGG QSQLVCSGCR NLLMYPVGAT SVCCAVCNAV TAVPPPGTEM AQLVCGGCHT  60
LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL MYQYGARSVK CAVCSFVTSV
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0576751e-104AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY1169511e-104AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY3496181e-104AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201547.13e-76protein LOL1
SwissprotQ93ZB19e-74LOL1_ARATH; Protein LOL1
TrEMBLA0A2K3N6E22e-74A0A2K3N6E2_TRIPR; Protein LOL1-like
TrEMBLA0A2Z6M1X82e-74A0A2Z6M1X8_TRISU; Uncharacterized protein
STRINGAES908197e-75(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]