PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00285
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 184aa    MW: 20286.5 Da    PI: 7.1844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00285genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183887255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  AA53G00285 38 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 87
                69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.09E-333797No hitNo description
PfamPF008475.0E-123787IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-323896IPR001471AP2/ERF domain
SMARTSM003808.5E-3938101IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-213896IPR016177DNA-binding domain
PROSITE profilePS5103222.4973895IPR001471AP2/ERF domain
PRINTSPR003675.1E-103950IPR001471AP2/ERF domain
PRINTSPR003675.1E-106177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQDTPHRHRG TTAERSVKNS KEKKENQNSN KNISKHPSFR GVRMRQWGKW VSEIREPRKK  60
SRIWLGTFST PEMAARAHDV AALAIKGGSA HLNFPDLAYN LPRPASADPK DIQAAAAAAA  120
AAIDDDSSAA LQSPSSSMTS SLTSSPIADD AFSDLPDLLL DVSHKIDGFW DSFPYEEPFF  180
SENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1726101277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879568.12e-83ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP37e-79ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLD7LIJ55e-82D7LIJ5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1597__AT2G35700.18e-83(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-63ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]