PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00325
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 470aa    MW: 52500.3 Da    PI: 6.7418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00325genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12323369455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  AA53G00325 323 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 369
                 799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-4148227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17319385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-14322373No hitNo description
PfamPF000104.2E-10323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16323384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGLKFWENQD DRVMVESTIG SEACDFFISS ASNSVLTKLV PPLSDPNLQQ GLRHLVEGSE  60
WDYAIFWLAS NVNSSDGCVL IWGDGHCRLP KVKKGISGED SSKLDETKRR VLQKLHLSFV  120
GSDEEHRLPK SGPLSDLEMF HLASMYFSFR CDTSKYGPAG TYVSGKPLWA ADLPSCLSYY  180
RVRSFLGRSA GFQTVLSVPV NSGVVELGSL RQIPEDKSVI EMVKAVFGGS DFVQAKEAPK  240
IFGRQLSLGN GGSKPRSMSI NFSPKMEDDT GFSLESYDVQ AIGGSNQVYG YEQGKDEALY  300
LTDEQKPRKR GRKPANGREE ALNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLAD  360
AITYITDMQK KIRVYETEKQ IMSRRESNQI TPADIDFQQR HEDGIVRLSC PLETHPVSSV  420
IQTFREHELT PHDANVAVTE DGVVHTFTVR PQAGFTAEQL KDKLVASFAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26317402283Transcription factor MYC2
5gnj_B4e-26317402283Transcription factor MYC2
5gnj_E4e-26317402283Transcription factor MYC2
5gnj_F4e-26317402283Transcription factor MYC2
5gnj_G4e-26317402283Transcription factor MYC2
5gnj_I4e-26317402283Transcription factor MYC2
5gnj_M4e-26317402283Transcription factor MYC2
5gnj_N4e-26317402283Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00325
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870159.10.0transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLD7M9V30.0D7M9V3_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_702851.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]