PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00385
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 268aa    MW: 30793.7 Da    PI: 7.5756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00385genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16114165155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P +   + +K + a+i+  Av++Ik+L+
  AA53G00385 114 QRMTHIAVERNRRKQMNDYISSLRSLMPDS---YVQKSDQASIVGGAVNFIKELE 165
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.1E-15113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-14113169No hitNo description
PROSITE profilePS5088816.025113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16113179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALEEVIFQQ DNIYNEDESL VPFYDLQSYL TFLDNQTQNY DSTFLQDGYF WSSTSTTTLP  60
HQCSPEIEKI TPVDYSTCSQ NRNSDVNGVG SIDEVKRRRR RSRLKKNKEE IHNQRMTHIA  120
VERNRRKQMN DYISSLRSLM PDSYVQKSDQ ASIVGGAVNF IKELEHRLHL LNLKDKDLSE  180
VFKFPQFSMD SSSAGCSSLA DIEVSLVESH ASLKIRSKRK PKLLINLITG LQNLGFIILH  240
LNVSTVTDFI LYSFSTKTPS RSTCPNYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100KRRRRR
2114125RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00385
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480197.15e-99PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-52BH096_ARATH; Transcription factor bHLH96
TrEMBLR0GEN37e-96R0GEN3_9BRAS; Uncharacterized protein
STRINGBostr.13404s0054.1.p5e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]