PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00412

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 373aa MW: 41049.7 Da PI: 6.4304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00412	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	217	265	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq AA53G00412 217 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 265 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	212	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.32E-11	212	269	No hit	No description
PROSITE profile	PS50888	15.485	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-17	215	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	217	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGGGGDDESE MRFKHREEEP RVSRIEATSM PMYAKADPFF SSTDWDPAVS AMVSSNAAGG 60 FSSSHYPSLV MDSGFSHYPS GSGYADMSSS LLPYGNPSDC SGQIGHVLGS DKKSGCVGRL 120 IRSGESHEDH QISDDGVLGG SPSRKRRQPE MDSAPSSQWN KKAVDKYNQN DVQKGSNVED 180 QRQKKPESEQ NKESSQSGEA PKQDYIHVRA RRGQATNSHS LAERVRREKI SERMRLLQEL 240 VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EINMDIDRII AKDLMHSRDR 300 NVSTLGLATG LNPSQYGVIP GTIQNIPATN PQYNPMSQTV LSSELQSLYQ MGFVPNPSTM 360 DSFSPNGRLK PEL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGGGGDDESE MRFKHREEEP RVSRIEATSM PMYAKADPFF SSTDWDPAVS AMVSSNAAGG  60
FSSSHYPSLV MDSGFSHYPS GSGYADMSSS LLPYGNPSDC SGQIGHVLGS DKKSGCVGRL  120
IRSGESHEDH QISDDGVLGG SPSRKRRQPE MDSAPSSQWN KKAVDKYNQN DVQKGSNVED  180
QRQKKPESEQ NKESSQSGEA PKQDYIHVRA RRGQATNSHS LAERVRREKI SERMRLLQEL  240
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EINMDIDRII AKDLMHSRDR  300
NVSTLGLATG LNPSQYGVIP GTIQNIPATN PQYNPMSQTV LSSELQSLYQ MGFVPNPSTM  360
DSFSPNGRLK PEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	SRKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00412

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548597.1	1e-170	PREDICTED: transcription factor bHLH74-like
Swissprot	Q6NKN9	1e-165	BH074_ARATH; Transcription factor bHLH74
TrEMBL	R0I6X0	1e-169	R0I6X0_9BRAS; Uncharacterized protein
STRING	Bostr.13671s0476.1.p	1e-170	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-167	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]