PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00437
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 181aa    MW: 20787.1 Da    PI: 6.3908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00437genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-2580137259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ++WrKYGqK +k+s++ r+YYrC+ ++C+++k+v++ ++ p ++ +tY g H ++
  AA53G00437  80 DDDFSWRKYGQKFIKNSPHQRNYYRCSESNCKARKHVQKIQDSPPIFRTTYVGLHMCQ 137
                 79*****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.03E-2477137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-2678137IPR003657WRKY domain
SMARTSM007742.2E-3079138IPR003657WRKY domain
PfamPF031067.5E-2480137IPR003657WRKY domain
PROSITE profilePS5081121.17280139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLTDSDQKKV AAAILRGQEN AGNLKAMIDP TLSVHVDTIL ESFSTCLSLL GSSSHQSNKK  60
RKSFEEEELV RDSPTLINDD DDFSWRKYGQ KFIKNSPHQR NYYRCSESNC KARKHVQKIQ  120
DSPPIFRTTY VGLHMCQAQL FLDSAHENGS SRVIQFDQAS NEHQETNQIT NQDLLNDDFW  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-14801341872Probable WRKY transcription factor 4
2lex_A1e-14801341872Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619271.12e-33PREDICTED: probable WRKY transcription factor 64
RefseqXP_018512184.12e-33PREDICTED: probable WRKY transcription factor 63 isoform X2
TrEMBLA0A3P6AQ633e-32A0A3P6AQ63_BRACM; Uncharacterized protein
STRINGBra008459.1-P8e-33(Brassica rapa)
STRINGBo2g095820.17e-33(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.13e-36WRKY DNA-binding protein 64