PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00532

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 326aa MW: 36820.3 Da PI: 8.9923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00532	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.2e-53	16	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ ++++ AA53G00532 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNNHK 113 79**************************.89***********988899***************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ pkg ktdW+mheyrl AA53G00532 114 VGVKKALVFYGGKPPKGIKTDWIMHEYRL 142 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-65	8	178	IPR003441	NAC domain
PROSITE profile	PS51005	60.539	16	177	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MERVGDSSMG NGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE 60 LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN NHKVGVKKAL 120 VFYGGKPPKG IKTDWIMHEY RLIDNGNITS AVKPIELATR KNSLRLDDWV LCRIYKKNSS 180 QRPTMERILM REDLIEGMLS KSSANSSSTS VLENDNNNNN NNNNEEHFFN GMVVSSDKRS 240 LCGQYRIGQE ASGSSTFGSF LSTKRFQTDL NNENNNYNVS FVSMLSEIPQ SSAFNGNGVI 300 DTTSSLADQH GILRQSFHLP NMNWHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-75	16	180	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-75	16	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-75	16	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-75	16	180	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-75	16	180	20	171	NAC domain-containing protein 19
3swm_B	4e-75	16	180	20	171	NAC domain-containing protein 19
3swm_C	4e-75	16	180	20	171	NAC domain-containing protein 19
3swm_D	4e-75	16	180	20	171	NAC domain-containing protein 19
3swp_A	4e-75	16	180	20	171	NAC domain-containing protein 19
3swp_B	4e-75	16	180	20	171	NAC domain-containing protein 19
3swp_C	4e-75	16	180	20	171	NAC domain-containing protein 19
3swp_D	4e-75	16	180	20	171	NAC domain-containing protein 19
4dul_A	3e-75	16	180	17	168	NAC domain-containing protein 19
4dul_B	3e-75	16	180	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00532

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473311.1	0.0	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GY42	0.0	NAC25_ARATH; NAC transcription factor 25
TrEMBL	V4JVB8	0.0	V4JVB8_EUTSA; Uncharacterized protein
STRING	Bostr.10040s0089.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-178	NAC domain containing protein 25