PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00549

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NF-YC

Protein Properties

Length: 191aa MW: 21767.6 Da PI: 9.8509

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00549	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	49.5	9.6e-16	88	173	14	99
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ k ++P+ ri++i+++d+ ++i +a l+ ka e+f+ +t ++ + + k++ ++ ++++v++ + ++fl d vp++ AA53G00549 88 EETKTFRFPMNRIRRIMRSDNTAHQIMQDAVFLVNKATEMFMDRFTEEAYESSVQDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 173 5678889****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.02E-20	77	172	IPR009072	Histone-fold
Pfam	PF00808	2.3E-20	94	157	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.4E-24	95	172	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKEKEKKTRG DGVCTTGKRK IRSAASKNRK PPSKIHRAIP SEVHEISETS SSDSTEEARD 60 GGGVESRKMV KARVEKNHRD SVIGGGVEET KTFRFPMNRI RRIMRSDNTA HQIMQDAVFL 120 VNKATEMFMD RFTEEAYESS VQDKKKFIHY KHLSSVVSNE ERYEFLADCV PEKLRADVAL 180 EQWKTAMADA A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00549

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645785.1	1e-72	nuclear transcription factor Y subunit gamma
TrEMBL	A0A087HLV7	5e-70	A0A087HLV7_ARAAL; Uncharacterized protein
STRING	Cagra.1637s0006.1.p	7e-72	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	5e-59	nuclear factor Y, subunit C10