PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00624
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 112aa    MW: 12983 Da    PI: 10.429
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00624genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.96.2e-122292956
                HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56
                ++e LAk+l L+ rq+ vWFqNrRa+ k
  AA53G00624  2 QKEALAKHLMLKPRQIEVWFQNRRARSK 29
                899***********************98 PP
2HD-ZIP_I/II84.11.9e-271632789
  HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
                 ++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n rL++eveeLr+
   AA53G00624  1 KQKEALAKHLMLKPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNVRLHREVEELRA 63
                 69***********************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.779131IPR001356Homeobox domain
CDDcd000863.62E-7132No hitNo description
SuperFamilySSF466891.58E-9241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-10237IPR009057Homeodomain-like
PfamPF000462.8E-9229IPR001356Homeobox domain
PROSITE patternPS000270629IPR017970Homeobox, conserved site
SMARTSM003401.1E-203174IPR003106Leucine zipper, homeobox-associated
PfamPF021832.8E-93165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
KQKEALAKHL MLKPRQIEVW FQNRRARSKL KQTEMECEYL KRWFGSLTEQ NVRLHREVEE  60
LRAMKVGPST VSSASNLTMC PRCERVTTAS SPLTKSTETP VKKALQPQDP EN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12331RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311815e-70AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876750.28e-60LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-17
RefseqXP_018481701.12e-60PREDICTED: homeobox-leucine zipper protein ATHB-17-like
SwissprotQ8S9N69e-59ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLD7LLR22e-59D7LLR2_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50000313e-60(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-61homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]