PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00646

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 469aa MW: 52004.9 Da PI: 5.4827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00646	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+ F++ ++ +H ++ AA53G00646 117 FECPICGTAFTSEEDVSVHVESC 139 89*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	5.72E-20	166	261	No hit	No description
SuperFamily	SSF143503	1.7E-17	177	241	IPR018997	PUB domain
SMART	SM00580	9.5E-21	179	246	IPR018997	PUB domain
Pfam	PF09409	8.3E-17	180	249	IPR018997	PUB domain
SuperFamily	SSF54236	3.88E-12	331	440	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	9.262	356	440	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.5E-7	356	439	No hit	No description
Pfam	PF00789	1.9E-4	357	406	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSSTSEPV NQIHNRFNPP PQAPNPKPKP 60 KPAPSPSTPL PEKPISSGST KTTDPDPVRA PQDGFDPYGA FITSSNRSQN GYSLNMFECP 120 ICGTAFTSEE DVSVHVESCL GSSNENNNSS SENDVNRDDS KEEMEKAVVL YLSGKPSDSS 180 VDVLLRLLKN IVKEPENGKF RRIRMSNAKI KEAIGEVAGG TELLEFVGFE LKEEDGEIWA 240 VMEVPGEEQS QLINKVLGFL EHRKTEVPTK EDSSGSSAQV VAAEEPVVRK KIDRQIRVFF 300 SVHESVASRI EVPESFYSLS ADEIKREADL RRKKLAESQL LIPRSYKEKQ AKAARKRYTR 360 TMIRVQFPDG VVLQGVFAPW EQTIALYEFV SSALKEPSLQ FELLDPVLVK RRVIPHTPPP 420 GQKPITLEDE ELVPSALIKF RPIETDSLVF TGLSNELLEI SEPLVNPQA

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MDDVKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSSTSEPV NQIHNRFNPP PQAPNPKPKP  60
KPAPSPSTPL PEKPISSGST KTTDPDPVRA PQDGFDPYGA FITSSNRSQN GYSLNMFECP  120
ICGTAFTSEE DVSVHVESCL GSSNENNNSS SENDVNRDDS KEEMEKAVVL YLSGKPSDSS  180
VDVLLRLLKN IVKEPENGKF RRIRMSNAKI KEAIGEVAGG TELLEFVGFE LKEEDGEIWA  240
VMEVPGEEQS QLINKVLGFL EHRKTEVPTK EDSSGSSAQV VAAEEPVVRK KIDRQIRVFF  300
SVHESVASRI EVPESFYSLS ADEIKREADL RRKKLAESQL LIPRSYKEKQ AKAARKRYTR  360
TMIRVQFPDG VVLQGVFAPW EQTIALYEFV SSALKEPSLQ FELLDPVLVK RRVIPHTPPP  420
GQKPITLEDE ELVPSALIKF RPIETDSLVF TGLSNELLEI SEPLVNPQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	1e-11	311	404	23	118	Tether containing UBX domain for GLUT4
5ifs_C	1e-11	311	404	23	118	Tether containing UBX domain for GLUT4
5ifw_A	7e-12	311	404	23	118	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00646

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291059.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	R0FNB3	0.0	R0FNB3_9BRAS; Uncharacterized protein
STRING	XP_006291059.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]