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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AA53G00675 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 294aa MW: 32839.1 Da PI: 10.2155 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AA53G00675 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 340.5 | 4.2e-104 | 1 | 294 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki......rernlalsekkaavaerdmaflqrdkalae.rnkalverdnkllalllvens 90
mdddg+ rn+gyyepa +++k nlglqlms+i +r++k+ + nl ++++++++++rd + ++ + + n + + ++k++++l++++s
AA53G00675 1 MDDDGF--RNWGYYEPAaaTTFKGNLGLQLMSTI-DRNTKPflpgrnGDPNL-MIGPNGSYHPRDCSVSESSSSMPMsYNSWINQPKDKFFNMLPINTS 95
99**99..9******99889**************.9*********7667788.9***********66655555554412344444789*******9997 PP
GAGA_bind 91 lasalpvgvqvlsgt..ksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187
++++ +s+t ++ +s+q l+++q +++ + +++ e + i+e+ + k++k+k+ + +++++ ++ka+k++k + +++ +++r+
AA53G00675 96 ------NYTNLISETpgNTSNSMQILHHQQQQQQITSSGNTNRFEDNSIQEEIAQPKKRKTKS-TTTTTTTATPKARKPRK----P---KEETVQQQRV 180
......344444444225566777778877777777777777777777777665555555444.33333334444444444....1...1222333689 PP
GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
k kks+d+v+ngv++D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+Lek+a+eGy+++n++DLk
AA53G00675 181 KPVKKSVDVVINGVNIDISSLPVPVCTCTGSPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKIASEGYNFGNAIDLK 279
*************************************************************************************************** PP
GAGA_bind 287 dhWAkHGtnkfvtir 301
+hWA+HGtnkfvtir
AA53G00675 280 THWARHGTNKFVTIR 294
**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATTF KGNLGLQLMS TIDRNTKPFL PGRNGDPNLM IGPNGSYHPR 60
DCSVSESSSS MPMSYNSWIN QPKDKFFNML PINTSNYTNL ISETPGNTSN SMQILHHQQQ 120
QQQITSSGNT NRFEDNSIQE EIAQPKKRKT KSTTTTTTTA TPKARKPRKP KEETVQQQRV 180
KPVKKSVDVV INGVNIDISS LPVPVCTCTG SPQQCYRWGC GGWQSACCTT NISMYPLPMS 240
TKRRGARISG RKMSQGAFKK VLEKIASEGY NFGNAIDLKT HWARHGTNKF VTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
