PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00676
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 440aa    MW: 49189.3 Da    PI: 8.7203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00676genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-057496123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++C++ F r  nL+ H r+H
  AA53G00676 74 YICEICNQGFQRDQNLQMHRRRH 96
                89********************9 PP
2zf-C2H214.50.0001152174123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k +  +s++k H++t+
  AA53G00676 152 WVCERCSKGYAVQSDYKAHLKTC 174
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-57197No hitNo description
Gene3DG3DSA:3.30.160.601.3E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8667496IPR007087Zinc finger, C2H2
SMARTSM003550.00657496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355160116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4143173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100152179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLNNNGANNN TNINTCCVVS SSSSDPFLSS SENGINNTTE TSTQKRKRRP AGTPDPDAEV  60
VSLSPRTLLE SDRYICEICN QGFQRDQNLQ MHRRRHKVPW KLLKRDNSTE IKKRVYVCPE  120
PTCLHHDPCH ALGDLVGIKK HFRRKHSNHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS  180
CDCGRVFSSQ YFYLLFRVES FIEHQDNCTV RRVNTEPPQP PQQNAVTIQA CSSRTASTAS  240
TNPSSDATAA AATPPPPPLL GQPLRKIFSS QNNLNLELQL LPLISIQNPN QENQSQIKDS  300
SHHHHETTNL NLTIAPSSSS SHHDHYHSIK EMAISEQIMK IAIKEKALAE EAKREAKRQR  360
EIAENEFLNA KKIRQQAKAE LERAKLLQEH SMKKISSTIM QVTCQACKGQ FQAAAASAVA  420
VADETSLVVS YMSSANTDGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-15148208355Zinc finger protein JACKDAW
5b3h_F4e-15148208355Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00676
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065321e-141AC006532.5 Arabidopsis thaliana chromosome 2 clone F14H20 map CIC11A04, complete sequence.
GenBankAC0072651e-141AC007265.5 Arabidopsis thaliana chromosome 2 clone F23I14 map CIC11A04, complete sequence.
GenBankCP0026851e-141CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114218.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_013713043.10.0protein SHOOT GRAVITROPISM 5
SwissprotF4IPE30.0IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A3P5YCK90.0A0A3P5YCK9_BRACM; Uncharacterized protein
STRINGBra017432.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-169C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]