PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00684

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 105aa MW: 11348.4 Da PI: 11.0814

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00684	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	35	88	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av+ LGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR AA53G00684 35 PRLRWTPDLHRCFVNAVDLLGGQHKATPKLVLKMMDVKGLTISHVKSHLQMYRG 88 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-31	31	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.33	31	91	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.0E-25	35	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.54E-15	35	87	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-9	36	87	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGKCGGRSGD VNGVRCNGNG NGGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDLLGGQHKA 60 TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKAGNMF LCKFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-21	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-21	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-21	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-21	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-21	36	90	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00684

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229511	1e-55	AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBank	BT008556	1e-55	BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBank	BT008699	1e-55	BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBank	KJ138924	1e-55	KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436922.1	3e-50	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	4e-41	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078F8F8	8e-49	A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBL	A0A398AHD6	8e-49	A0A398AHD6_BRACM; Uncharacterized protein
TrEMBL	M4ECV8	8e-49	M4ECV8_BRARP; Uncharacterized protein
STRING	Bra026618.1-P	1e-49	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-41	G2-like family protein