PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00738

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 375aa MW: 43005.2 Da PI: 6.8492

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00738	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.1	7.1e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngilKKA+ELS+LCd+++ +++fs++gk AA53G00738 9 KRLENTNGRQATYAKRKNGILKKANELSILCDIDIVLLMFSPSGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.221	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.9E-30	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.84E-24	2	54	No hit	No description
SuperFamily	SSF55455	3.14E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGILK KANELSILCD IDIVLLMFSP SGKPSLCCGR 60 RSTIEEVLTK FAQVTPQERT KRKFESLEVL KKTFQKLDHD VNIREFIASN NSTIEDLSTQ 120 VRMMQGRLSE IHGRLSYWRE IDKINNVEHL EQLEFSIRQS LDQLRTHKEH LVEQQQQHVI 180 QLDNANFVKD WSTCSMPDGI QIPLEQQLQS MSWILNNNNT NIVPEEHNSI PQRDVECSAS 240 SSFGSYPGYF GTGKSPEITI SGQETSFLDE LTTTGQLKPQ SNTTQQQQQQ QQQFNNNLVY 300 NPNLHNDPNQ QSLAPPVFNF PINQRDFHHL NGFFEAPQGS VFNNNQPRFG SSSNSLPCSI 360 AMFDELFFSQ MQQPN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKNGILK KANELSILCD IDIVLLMFSP SGKPSLCCGR  60
RSTIEEVLTK FAQVTPQERT KRKFESLEVL KKTFQKLDHD VNIREFIASN NSTIEDLSTQ  120
VRMMQGRLSE IHGRLSYWRE IDKINNVEHL EQLEFSIRQS LDQLRTHKEH LVEQQQQHVI  180
QLDNANFVKD WSTCSMPDGI QIPLEQQLQS MSWILNNNNT NIVPEEHNSI PQRDVECSAS  240
SSFGSYPGYF GTGKSPEITI SGQETSFLDE LTTTGQLKPQ SNTTQQQQQQ QQQFNNNLVY  300
NPNLHNDPNQ QSLAPPVFNF PINQRDFHHL NGFFEAPQGS VFNNNQPRFG SSSNSLPCSI  360
AMFDELFFSQ MQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	3e-12	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00738

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875185.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	D7LQC8	0.0	D7LQC8_ARALL; Predicted protein
STRING	Al_scaffold_0005_228	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-168	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]