PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01143
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 448aa    MW: 51427.8 Da    PI: 4.9619
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01143genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.4e-5661341129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 +ppGfrFhPtdeelvv+yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++
  AA53G01143   6 MPPGFRFHPTDEELVVYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-HS 102
                 79****************************.99***************6434555777*************************************9.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                 ++vg+kktLv+y+grap+g++tdWvmheyrle
  AA53G01143 103 RTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                 9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-644156IPR003441NAC domain
PROSITE profilePS5100561.0796156IPR003441NAC domain
PfamPF023651.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV VYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEEECES KSGIQDAYAL CRVFKKSALT NRLEEQQNHG MKKTKATTNS  180
EQSSSTCLYS DGIYENVENS GYDPISPETG LTQLGNISTS DMETTDNKWS QFMSHDSEAF  240
NFPNQSQFSS QYGTISYPPS KVDIALECPR MQNGTLLEFN VEEVVPQGEY FGQNIGNGTD  300
EMLSKIIALA QASQDSWEGA SASVSASGNF QTDYFPRNGE SSWNMKNLDM QEHHVVDRFK  360
EERFVENLRW VGVSNKELEK SFSEEQSTVV PIENIWNYRR DDQEHHQGVN MNNINGDLDD  420
VFTLEFSDNE HNDENRSSSP RFEMVKKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-58115812167NO APICAL MERISTEM PROTEIN
1ut4_B7e-58115812167NO APICAL MERISTEM PROTEIN
1ut7_A7e-58115812167NO APICAL MERISTEM PROTEIN
1ut7_B7e-58115812167NO APICAL MERISTEM PROTEIN
3swm_A7e-58115815170NAC domain-containing protein 19
3swm_B7e-58115815170NAC domain-containing protein 19
3swm_C7e-58115815170NAC domain-containing protein 19
3swm_D7e-58115815170NAC domain-containing protein 19
3swp_A7e-58115815170NAC domain-containing protein 19
3swp_B7e-58115815170NAC domain-containing protein 19
3swp_C7e-58115815170NAC domain-containing protein 19
3swp_D7e-58115815170NAC domain-containing protein 19
4dul_A7e-58115812167NAC domain-containing protein 19
4dul_B7e-58115812167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618727.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBLA0A0D3ANA60.0A0A0D3ANA6_BRAOL; Uncharacterized protein
STRINGBo2g052630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28