PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01286
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 390aa    MW: 41930.9 Da    PI: 7.1324
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01286genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.2e-3957118263
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                 ke+al+cprC+s +tkfCyynnysl+qPryfCk CrryWt+GG+lrn+P+Ggg+rknk+sss
  AA53G01286  57 KEQALNCPRCNSIHTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPIGGGSRKNKRSSS 118
                 7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2950115IPR003851Zinc finger, Dof-type
PfamPF027017.3E-3359115IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.60261115IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDTAKWPQEF VVKPMNEIVT NTCLKQSLPL PPPPPPPQTV GAVVGSTVER KMTRPQKEQA  60
LNCPRCNSIH TKFCYYNNYS LTQPRYFCKD CRRYWTEGGS LRNIPIGGGS RKNKRSSSSS  120
TTTTTTSSSS SNSNSSPSKK QLFATQNPNL NEGKVQVQDL TFSQGLNTNP HEVKDLNLAF  180
SQGFGIAEFL QVPSIKNNNN SNPLVSTSSA LELLGISNSS GSSSIQRPSF IGFPHVNDPS  240
SVYTPSGSGF GLSYPPFQEF MRPPTLGFSL DTNGGYNGEP LNQQEGSNSN INNGNNTNGI  300
PLLPFESLKL PVSSSSTNSS GGGNDHHHHQ QHQHDNHQEQ QHNQGNSDHE EEKEEGGDQS  360
VGFWSGMLGV GVGGGGAGAT TASGGGTWQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391598.11e-122dof zinc finger protein DOF1.8
SwissprotQ84JQ81e-112DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLV4KCL51e-121V4KCL5_EUTSA; Uncharacterized protein
STRINGXP_006391598.11e-122(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-100Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]