PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G01296

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 881aa MW: 97456.3 Da PI: 6.3355

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G01296	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.6e-29	562	612	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ AA53G01296 562 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 612 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.484	546	632	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-26	564	612	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-18	763	832	No hit	No description
SMART	SM00666	1.9E-19	764	863	IPR000270	PB1 domain
PROSITE profile	PS51745	16.642	764	863	IPR000270	PB1 domain
Pfam	PF00564	1.9E-16	766	832	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.7E-22	766	833	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MLMELDDLDL GGSWPMDQIT FASNFKSPSI FSSSEQPFSP LWTFSEAASA SGDGGELCSV 60 STVAGAQARM TDYSALLTST PGSESESPKD NKMVPSPLWG IMPMENPESY CTIKGKMTQA 120 LRYFKESTGQ QHVLAQVWAP VRNRGRNVLT TSGQPFVLGP NSNGLNQYRM VSLTYMFSVD 180 SERDGELGLP GRVFMKKLPE WTPNVQYYSS KEFSRLGHAL NYNVQGTLAL PVFEPSRQVC 240 VGVVELIMTS PMINYAPEVE KVCKALEAVN LKTSEILSHE TTQICNEGRQ NALAEILEIL 300 TVVCETYKLP LAQTWVPCRH RSVLAYGGGF KKSCSSFDGS CMGKVCMSTS DLAVYVVDAH 360 VWGFRDACAE HHLQKGQGVA GRAFLSGNLC FCRDVTRFCK TDYPLVHYAR MFKLTSCLAI 420 CLKSTHTGDD EYVLEFFLPP AITDKSKQDY LLGSLFETMN QHFSSLKLVS GTELCQNETS 480 LEVVEASDDG TVYSKLESIQ MHPAPNADDY LQPNESDQKV ILTSEIMKNN ELAGGFEKFE 540 TLNPLSEAKT AKKSERKRGK TEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG 600 ISRWPSRKIN KVNRSLTRLK HVIDSVQGGD GSITLTSLSS RPWPPNLDGT SPQIECQPPK 660 NYASTSRSPK TYLEDVKIEN RDAEDSAGSS TSRASCKVSP VCETRFRFTT QDKDPKEPFR 720 HTALDDSDSS SKNLSHFWTH RTCEDTASPS TLHVAENKSL NLNLLSIKAT YKEDIIRFKI 780 SPDSISITEL KQQVAKRLKL EVAAFELKYL DDDNEWVSVS SDADLRECLD TSSLAAATVN 840 GTAAKVNLLS GRCSTLRFSV HDVTPNFGSS CESSEETMMC L

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MLMELDDLDL GGSWPMDQIT FASNFKSPSI FSSSEQPFSP LWTFSEAASA SGDGGELCSV  60
STVAGAQARM TDYSALLTST PGSESESPKD NKMVPSPLWG IMPMENPESY CTIKGKMTQA  120
LRYFKESTGQ QHVLAQVWAP VRNRGRNVLT TSGQPFVLGP NSNGLNQYRM VSLTYMFSVD  180
SERDGELGLP GRVFMKKLPE WTPNVQYYSS KEFSRLGHAL NYNVQGTLAL PVFEPSRQVC  240
VGVVELIMTS PMINYAPEVE KVCKALEAVN LKTSEILSHE TTQICNEGRQ NALAEILEIL  300
TVVCETYKLP LAQTWVPCRH RSVLAYGGGF KKSCSSFDGS CMGKVCMSTS DLAVYVVDAH  360
VWGFRDACAE HHLQKGQGVA GRAFLSGNLC FCRDVTRFCK TDYPLVHYAR MFKLTSCLAI  420
CLKSTHTGDD EYVLEFFLPP AITDKSKQDY LLGSLFETMN QHFSSLKLVS GTELCQNETS  480
LEVVEASDDG TVYSKLESIQ MHPAPNADDY LQPNESDQKV ILTSEIMKNN ELAGGFEKFE  540
TLNPLSEAKT AKKSERKRGK TEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG  600
ISRWPSRKIN KVNRSLTRLK HVIDSVQGGD GSITLTSLSS RPWPPNLDGT SPQIECQPPK  660
NYASTSRSPK TYLEDVKIEN RDAEDSAGSS TSRASCKVSP VCETRFRFTT QDKDPKEPFR  720
HTALDDSDSS SKNLSHFWTH RTCEDTASPS TLHVAENKSL NLNLLSIKAT YKEDIIRFKI  780
SPDSISITEL KQQVAKRLKL EVAAFELKYL DDDNEWVSVS SDADLRECLD TSSLAAATVN  840
GTAAKVNLLS GRCSTLRFSV HDVTPNFGSS CESSEETMMC L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G01296

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	V4JU57	0.0	V4JU57_EUTSA; Uncharacterized protein
STRING	Bostr.29223s0038.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]