PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00098
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 320aa    MW: 34613.1 Da    PI: 7.9593
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00098genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92.1e-39401482107
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa..ks 97 
                 ++ k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  ++s + ++s+ s++ +++s+    s
  AA54G00098  40 TVTKRPSKDRHIKVDGRGRRIRMPAVCAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRTNNSTISNPPSSSSSRklIS 138
                 789******************************************************************999777777777776666644444431244 PP

         TCP  98 kksqksaasa 107
                 +++++++a++
  AA54G00098 139 NQQNAQNAAV 148
                 4555444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-3646150IPR005333Transcription factor, TCP
PROSITE profilePS5136926.34346100IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESHQNNTDH HHDQTTNSTH LVPFMTGPIS TSSIPVQKPT VTKRPSKDRH IKVDGRGRRI  60
RMPAVCAARV FQLTRELQHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRTN  120
NSTISNPPSS SSSRKLISNQ QNAQNAAVFG FQQQLYQNQI VTTTSDSSKS FPDLFKNHSI  180
DQSIHHDGNT GPSESVKSGS EGSDPDPGLN RFRTQNMIPP MWAATTVSTN GGNAFWMLPV  240
GGGNGGSSGV VDPSQQMWAF NSGRMGSMLV QQTAEMNNLG LFNGGGSYGD RGGLGMSIDQ  300
KPDRNHHLES DNQNPNSSPH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397460.11e-107transcription factor TCP23
SwissprotQ9LQF06e-98TCP23_ARATH; Transcription factor TCP23
TrEMBLV4LGJ91e-106V4LGJ9_EUTSA; Uncharacterized protein
STRINGBostr.1774s0019.1.p1e-108(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.15e-88TCP family protein