PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00108
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 117aa    MW: 14004.1 Da    PI: 9.8488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00108genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-192982356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++ +q++ Le+ Fe+++++ ae++ ++A+++gL+ rqV vWFqNrRa++k
  AA54G00108 29 KKRRLSLDQVKKLEKNFEEEKKLEAERKLRIAEETGLNPRQVAVWFQNRRARWK 82
                4557999**********************************************9 PP
2HD-ZIP_I/II110.51.1e-3528115188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  ekkrrls +qvk LE++Feee+kLe erK ++a+e gl+prqvavWFqnrRAR+k kqlE++y+ Lk+++d+lk +   L ++ + L+
   AA54G00108  28 EKKRRLSLDQVKKLEKNFEEEKKLEAERKLRIAEETGLNPRQVAVWFQNRRARWKIKQLEREYSLLKAHFDSLKIDYGDLLRQRKLLT 115
                  69***************************************************************************99999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-182285IPR009057Homeodomain-like
PROSITE profilePS5007116.5842484IPR001356Homeobox domain
SMARTSM003898.5E-162788IPR001356Homeobox domain
CDDcd000866.87E-142985No hitNo description
PfamPF000464.1E-162982IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-183682IPR009057Homeodomain-like
PRINTSPR000319.3E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000319.3E-56480IPR000047Helix-turn-helix motif
PfamPF021836.8E-984115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MDRLDSGEFQ AMVEAMENSV MEGDSFLEKK RRLSLDQVKK LEKNFEEEKK LEAERKLRIA  60
EETGLNPRQV AVWFQNRRAR WKIKQLEREY SLLKAHFDSL KIDYGDLLRQ RKLLTST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRARWKIKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00108
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284326.15e-40homeobox-leucine zipper protein ATHB-6-like
SwissprotP466686e-32ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A1R3K2I61e-38A0A1R3K2I6_9ROSI; Uncharacterized protein
TrEMBLA0A2P5S7C79e-40A0A2P5S7C7_GOSBA; Uncharacterized protein
STRINGA0A087GGZ04e-39(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-22homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]