PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA54G00190

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 327aa MW: 38083.9 Da PI: 7.6536

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA54G00190	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.7	1.1e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evikevd++k+ePwdL+ ++ + ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk + + AA54G00190 8 VPPGFRFHPTDEELLHYYLKKKISFEKFEM-EVIKEVDLNKIEPWDLQDkcRIGStPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRT-C 104 69**************************.99**********952433332556*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfykgrap+g+ktdW+mheyrle AA54G00190 105 YKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 137 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-57	7	179	IPR003441	NAC domain
PROSITE profile	PS51005	56.614	8	179	IPR003441	NAC domain
Pfam	PF02365	4.8E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SFEKFEMEVI KEVDLNKIEP WDLQDKCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC IRTCYKKIGM RKTLVFYKGR 120 APHGQKTDWI MHEYRLEDTE DPQTEPNVYI SNLSLTYLFI YKINLEQEDG WVVCRVFKKK 180 NLFKVGNGSN SNIDEISNKN SLQSRSFIHR ESPYQLIRNH GITNFELNKP AELDHLHNQY 240 PPMFQSQAIL KPSSSINGYD YLAKECENVA NEGIHEEQGG VSEWGMMSSH MSNEESSRSM 300 NNLLSIQQPS NLLSLRAEEI DLWGYSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	8	181	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	8	181	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	8	181	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	8	181	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	8	181	20	170	NAC domain-containing protein 19
3swm_B	1e-49	8	181	20	170	NAC domain-containing protein 19
3swm_C	1e-49	8	181	20	170	NAC domain-containing protein 19
3swm_D	1e-49	8	181	20	170	NAC domain-containing protein 19
3swp_A	1e-49	8	181	20	170	NAC domain-containing protein 19
3swp_B	1e-49	8	181	20	170	NAC domain-containing protein 19
3swp_C	1e-49	8	181	20	170	NAC domain-containing protein 19
3swp_D	1e-49	8	181	20	170	NAC domain-containing protein 19
4dul_A	1e-49	8	181	17	167	NAC domain-containing protein 19
4dul_B	1e-49	8	181	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA54G00190

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290194.1	1e-149	protein BEARSKIN2
Swissprot	Q9SV87	1e-147	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	R0FKW8	1e-147	R0FKW8_9BRAS; Uncharacterized protein
STRING	XP_006290194.1	1e-148	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-138	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]