PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA54G00229

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRF

Protein Properties

Length: 237aa MW: 26073.8 Da PI: 9.0063

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA54G00229	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.5	5.5e-24	180	223	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e AA54G00229 180 LEPWRCRRTDGKKWRCSRNVIPEQKYCERHTHKSRPRSRKHVEV 223 69***************************************985 PP
2	QLQ	38.5	3.5e-14	112	148	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaa..nqPvPpeLlqai 35 s F+ +Q+q+L++Q +yKy+ + ++PvP+eLl+ AA54G00229 112 SGFSESQFQELERQKNIYKYITSsaHVPVPSELLASF 148 56*****************9999*******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-4	112	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	14.004	113	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.7E-7	114	145	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.829	179	223	IPR014977	WRC domain
Pfam	PF08879	1.3E-19	181	222	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGTRAERKEG FGFGVVENSI KDAMVLPHYH QNPSSSSSSS SLCYCFAGGS ISNNHSGVHG 60 DPLFSSNQAY TSSLNDMFCL SGSASSSSVA ADPFFSLTSS GEIGRYMNEK ASGFSESQFQ 120 ELERQKNIYK YITSSAHVPV PSELLASFSK NQINPNSDVV KESSLKLGIA SSASNSSNDL 180 EPWRCRRTDG KKWRCSRNVI PEQKYCERHT HKSRPRSRKH VEVSSSTTTR NDIRFGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA54G00229

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023634790.1	3e-87	growth-regulating factor 8
Swissprot	Q9SU44	2e-73	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	R0H228	3e-80	R0H228_9BRAS; Uncharacterized protein
STRING	Cagra.1226s0080.1.p	4e-87	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-70	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]