PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00347
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 254aa    MW: 28805.1 Da    PI: 4.8295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00347genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-3175133259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY+++Hnh+
  AA54G00347  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPSMILITYTSDHNHP 133
                 69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3267135IPR003657WRKY domain
PROSITE profilePS5081132.3469135IPR003657WRKY domain
SuperFamilySSF1182903.27E-2770135IPR003657WRKY domain
SMARTSM007747.6E-3874134IPR003657WRKY domain
PfamPF031061.4E-2676133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKRGLNIERS FNEHESSQET SSDSPNSSSF NDMKPHATSS NSPKRSRRSI EKRVVNVPMK  60
EVEGSRVKGD TSPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSTKGCPARK QVERSRDDPS  120
MILITYTSDH NHPCPLSSRN GQKLKLEPEP EPEIEIEIEP EIEPEVMNLM ETTPSCVDDQ  180
FAWFSEMETT SSTILESPIF TREEKKRGDD DVAVYFPVMG EEDESLFADL GELPECSVVF  240
RQRSNVVGSQ VVIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2165135379Disease resistance protein RRS1
5w3x_D1e-2165135379Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655098.11e-124probable WRKY transcription factor 65
SwissprotQ9LP561e-125WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A087HRL91e-127A0A087HRL9_ARAAL; Uncharacterized protein
STRINGA0A087HRL91e-128(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-118WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]