PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00025
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 260aa    MW: 30137.4 Da    PI: 9.0174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00025genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.5e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l   +  +G  +W+t++   g+ R +k+c++rw +yl
       AA55G00025 16 KGLWSPEEDQKLSSFIFSHGHACWTTVPIQAGLQRNGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding50.16.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E+  ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
       AA55G00025  69 RGTFSSDEENTILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 114
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-191166IPR009057Homeodomain-like
PROSITE profilePS5129413.5241163IPR017930Myb domain
SuperFamilySSF466891.14E-2613110IPR009057Homeodomain-like
SMARTSM007172.0E-81565IPR001005SANT/Myb domain
PfamPF002492.5E-111663IPR001005SANT/Myb domain
CDDcd001678.83E-71963No hitNo description
PROSITE profilePS5129424.45464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2567118IPR009057Homeodomain-like
SMARTSM007178.8E-1568116IPR001005SANT/Myb domain
PfamPF002497.2E-1569114IPR001005SANT/Myb domain
CDDcd001671.05E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGKTKSGERP KQRQRKGLWS PEEDQKLSSF IFSHGHACWT TVPIQAGLQR NGKSCRLRWI  60
NYLRPGLKRG TFSSDEENTI LTLHSSLGNK WSRIAKYLPG RTDNEIKNYW HSYLKKKWLK  120
THPKTETQRS SSSSSSSSLL ASGTRNLEAE TETLDRLISF KNPSLSSEMN NFPNLFFSDW  180
ITSSDPQINF SSTLQDSKKI NYKPEEIIHD YDRFHYEEMM VNNNFSDFIF ATDIQQSDEC  240
SHYQNSSAQF FLNSNDGNYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24161177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00025
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444657.11e-111PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K42e-85LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1J3CQB51e-109A0A1J3CQB5_NOCCA; Transcription factor LAF1
STRINGXP_010444657.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-105myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]