PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA55G00056

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

TCP

Protein Properties

Length: 259aa MW: 28215 Da PI: 10.0771

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA55G00056	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.2	7.5e-31	43	147	6	101
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas....nsssg......kaak 92 +r+++ h kv+gR+ R+R++a+ca r+F+L++ LG+++d++ti WLlq a+pai+e+tgt ++a+++ + + + +++s + + ++++ AA55G00056 43 RRSKDGHIKVEGRGSRIRIPADCALRIFQLTRDLGHKTDGETIRWLLQRAEPAIIEATGTRPIPATAVviNGNLEIQTGSppplE---SnggsgeRKKR 138 79**********************************************************7777755554222222222233322...02333232222 PP TCP 93 saakskksq 101 + +k++k + AA55G00056 139 KRTKNEKGK 147 222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-24	45	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.619	45	99	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESTQEGKKI RKIDEIVVLA QDFVEPSSLP VEFLQPMNSS LNRRSKDGHI KVEGRGSRIR 60 IPADCALRIF QLTRDLGHKT DGETIRWLLQ RAEPAIIEAT GTRPIPATAV VINGNLEIQT 120 GSPPPLESNG GSGERKKRKR TKNEKGKNSL TSGLAPITAS DSGVNVNTQN LMPFGPVGEP 180 MVRPNESGQM WAIPTVDTTP FVNDATKPVS SYVSDASTVN SIMSTNGTTI PTLKDFSLKI 240 YDKKERKFLG SSENTSPKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	RKKRKR
2	135	140	KKRKRT
3	135	142	KKRKRTKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA55G00056

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442701.1	9e-78	PREDICTED: transcription factor TCP19-like
Refseq	XP_013614476.1	4e-78	PREDICTED: transcription factor TCP19
Refseq	XP_013676320.1	4e-78	transcription factor TCP19
Refseq	XP_022551734.1	4e-78	transcription factor TCP19
Swissprot	Q9LT89	4e-75	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A087GA98	4e-82	A0A087GA98_ARAAL; Uncharacterized protein
STRING	A0A087GA98	7e-83	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	9e-74	TCP family protein