PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00057
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 274aa    MW: 30197.9 Da    PI: 7.6085
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00057genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.98.7e-3577173489
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg...... 88 
                  k+r++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++                ++  s +      
  AA55G00057  77 LKRRSKDRHIKVEGRGRRIRIPARCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsvngtlkiP-------TD--SPPqlesdg 166
                 599***********************************************************99999444322212210.......11..111222222 PP

         TCP  89 ......k 89 
                       +
  AA55G00057 167 gsgdltR 173
                 2222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-2881160IPR005333Transcription factor, TCP
PROSITE profilePS5136925.51581135IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESTQEGKRI RKIDETVVLA NADNDYNSTE PDSETNQGML MKEEESLAGQ ELVESSLPVE  60
FLQPMNSSLN LPSTTALKRR SKDRHIKVEG RGRRIRIPAR CAARIFQLTR ELGHKSDGET  120
IRWLLERAEP AIIEATGTGT IPAIAVSVNG TLKIPTDSPP QLESDGGSGD LTRKRRKRKH  180
ATDNNSLTSG LAPITASNYG VNNDNVNTQN LMPFWPIGGP MVWPNQSAQM WAFPTTTPFV  240
NVATKPEIYD KKERQFLGSS ENTSPSLSPK DLGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178RKRRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00057
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401898.19e-98transcription factor TCP19
RefseqXP_024012296.19e-98transcription factor TCP19
SwissprotQ9LT892e-80TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A087GA981e-108A0A087GA98_ARAAL; Uncharacterized protein
STRINGA0A087GA981e-109(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.26e-70TCP family protein