PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA579G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 381aa    MW: 42861 Da    PI: 9.7973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA579G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06147169223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg++F+r ++L+ H+   H
  AA579G00001 147 ACSECGEVFPRLESLELHQAIrH 169
                  6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.141146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280146169IPR007087Zinc finger, C2H2
SuperFamilySSF563995.08E-18171377No hitNo description
Gene3DG3DSA:3.90.228.109.5E-14175377IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAPLPFLADP KEKNKKKKTQ KQKQKQNSSF SSWNQIKNIL SCKQMEGSRL LVHDPSKVTS  60
NHSYGSSSLS ICKFSDVIQG NARVGHRSDH SPESSNLGQE TGLLTRRSSS MVTSSSKAIH  120
FRKLSGCYEC HMIVDPTRYP ISPRLCACSE CGEVFPRLES LELHQAIRHA VSELGAQDSG  180
RNIVEIIFKS SWLEKDKPLY KMERILKVHN TQRTIQRFED ARDTVKSRAL VSTRKEPRST  240
VDGNELLRFH CTTISCSLGS RGSTSLCSAL PACRVCTIIR HGFHTKTLRL GNETKEVKGV  300
RTTASSGRAH DVLRCFDQRR AMLVCRVIAG RVRRMHSDPK EEDERVYDSV AAGDTNLDDL  360
VVFNPRAILP CFVVIYKCYD S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA579G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592621.10.0PREDICTED: uncharacterized protein LOC106300905
RefseqXP_013746890.20.0uncharacterized protein LOC106449724
TrEMBLA0A1J3HX580.0A0A1J3HX58_NOCCA; Uncharacterized protein
STRINGBra015598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-149C2H2-like zinc finger protein