PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00042
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 231aa    MW: 26820.8 Da    PI: 10.0317
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.5e-28131180251
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 pr+rWt++LH++Fv+av+ LGG+++AtPk++lelm+v++Ltl+hvkSHLQ
  AA57G00042 131 PRMRWTTTLHSHFVHAVQLLGGHQRATPKSVLELMDVQDLTLAHVKSHLQ 180
                 9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-13128181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-24129180IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-21131182IPR006447Myb domain, plants
PfamPF002491.2E-5132180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MELFPSQPDL FLHNNRTRRQ ESFSLSQDQD QEMRLGFMSK ASDSNRSSQN EEEYSLNQEL  60
VKRKSSVSGV SSVYKNESFD YYSLTGQQRD RRLITNPNYN LDHHHHHRRI QEHKPSSSPA  120
RFTARRGVRA PRMRWTTTLH SHFVHAVQLL GGHQRATPKS VLELMDVQDL TLAHVKSHLQ  180
VIINFHYLMY RTIKSTEKPT TSSGQSDICE NGSHGSNVRQ GRDLQSVWNY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13132180351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13132180351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13132180351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13132180351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13132180452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534554e-60AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284129.13e-75probable transcription factor KAN3
SwissprotQ941I23e-72KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A087G0H46e-77A0A087G0H4_ARAAL; Uncharacterized protein
STRINGA0A087G0H41e-77(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.14e-68G2-like family protein