PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00053
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 198aa    MW: 21515.6 Da    PI: 6.0005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00053genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-054567123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  AA57G00053 45 YSCNFCRREFRSAQALGGHMNVH 67
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-64272No hitNo description
PROSITE profilePS5015711.1984572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MWNPNKSHKQ FDDEEDTDES WEVKAFEQDT KANLSGGATW PPRSYSCNFC RREFRSAQAL  60
GGHMNVHRRD RATAAALTNN GNAAAAAAAR GGGGRGRGKT FINSCLPTTL IIQSTSTSNS  120
NIIDQGLSHQ FYQFQNPSGI FGNSSDLMNL YATSFPPSPP IPPPLSDGET IETSIGDELD  180
LELRLGHKTT IAPPPYNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134067229superman protein
2l1o_A4e-134067229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285463.14e-66zinc finger protein 10 isoform X1
TrEMBLR0F9L31e-64R0F9L3_9BRAS; Uncharacterized protein
STRINGXP_006285463.12e-65(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-51C2H2 family protein