PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00073
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 149aa    MW: 17485.9 Da    PI: 8.4303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00073genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.1e-5361361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                 lppGfrFhPtd+el+ +yL +k+eg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratk+gyWkatgkd++++++  
  AA57G00073   6 LPPGFRFHPTDQELIGYYLSRKLEGLEFEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGSRTNRATKAGYWKATGKDRKITCNss 103
                 79****************************.99**************96435556888*************************************9854 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++  +g +ktLvfy+grap g +t+W+mheyrl
  AA57G00073 104 SDVITGYRKTLVFYEGRAPLGDRTSWIMHEYRL 136
                 55559**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-572141IPR003441NAC domain
PROSITE profilePS5100554.2196149IPR003441NAC domain
PfamPF023652.4E-297136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGSSGLPPGF RFHPTDQELI GYYLSRKLEG LEFELEVIPV IDLYKFDPWE LPDKSFLPNR  60
DMEWFFFCPR DKKYPNGSRT NRATKAGYWK ATGKDRKITC NSSSDVITGY RKTLVFYEGR  120
APLGDRTSWI MHEYRLCDDY LSQKSPDFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-50613817144NO APICAL MERISTEM PROTEIN
1ut4_B5e-50613817144NO APICAL MERISTEM PROTEIN
1ut7_A5e-50613817144NO APICAL MERISTEM PROTEIN
1ut7_B5e-50613817144NO APICAL MERISTEM PROTEIN
3swm_A6e-50613820147NAC domain-containing protein 19
3swm_B6e-50613820147NAC domain-containing protein 19
3swm_C6e-50613820147NAC domain-containing protein 19
3swm_D6e-50613820147NAC domain-containing protein 19
3swp_A6e-50613820147NAC domain-containing protein 19
3swp_B6e-50613820147NAC domain-containing protein 19
3swp_C6e-50613820147NAC domain-containing protein 19
3swp_D6e-50613820147NAC domain-containing protein 19
4dul_A5e-50613817144NAC domain-containing protein 19
4dul_B5e-50613817144NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00073
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464553.14e-97PREDICTED: NAC domain-containing protein 86-like
SwissprotO496973e-93NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3P6ACQ52e-94A0A3P6ACQ5_BRACM; Uncharacterized protein
STRINGBostr.30275s0267.1.p8e-95(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-95NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]