PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00210
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 166aa    MW: 18935.7 Da    PI: 9.2809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00210genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-124268127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++t++C f+++tG C++G+ CkF+H++
  AA57G00210 42 PGTPECAFYMKTGVCNFGNFCKFHHPR 68
                68***********************96 PP
2zf-CCCH43.16.8e-14126151227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C +++rtG Ck+G++CkF+H++
  AA57G00210 126 DQPNCIYYMRTGDCKFGNTCKFNHPK 151
                 689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.5E-64168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-74270IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-104268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-44768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864124152IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4124151IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-11126151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4130149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LGSVNLAQID QSLRKLEQNE EKKSLRFYPS SVWPVNALPE RPGTPECAFY MKTGVCNFGN  60
FCKFHHPRDR VSDDLPLRPD QFGSVIPSIF DHNSKKLKQK EEAEGQLLKL VGTTVKPRNV  120
LPERPDQPNC IYYMRTGDCK FGNTCKFNHP KIKPESSLSL KDLSLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270055.11e-27PREDICTED: zinc finger CCCH domain-containing protein 57 isoform X3
TrEMBLA0A1U8AUA02e-26A0A1U8AUA0_NELNU; zinc finger CCCH domain-containing protein 57 isoform X3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-24C3H family protein